Software
Numerical Computing
Spectra
C++ library for large-scale eigenvalue and SVD problems (Honorable Mention of John Chambers Award 2016)
RSpectra
Large-scale eigenvalue decomposition, SVD, and principal component analysis
LBFGS++
A header-only C++ library for L-BFGS and L-BFGS-B algorithms
RcppNumerical
Rcpp integration for numerical computing libraries
Fastncdf
Fast computation of normal cumulative distribution function
Statistical Modeling and Machine Learning
RegOT
A collection of state-of-the-art solvers for regularized optimal transport, implemented in efficient C++ code
ReHLine
Regularized composite ReLU-ReHU loss minimization with linear computation and linear convergence
TemperFlow
Efficient multimodal sampling via tempered distribution flow
MarkerPen
Marker gene detection via penalized principal component analysis
ALMOND
Adaptive latent modeling and optimization via neural networks and Langevin diffusion
CDtau
Unbiased contrastive divergence algorithm for training energy-based latent variable models
MiniDNN
A header-only C++ library for deep neural networks
Recosystem
Recommender system using parallel matrix factorization
Graphics and Data Visualization
Showtext
An R package that makes it easier to use fonts in R graphics
R2SWF
Creating Flash animations from R graphics
Reproducible Research
Prettydoc
Creating pretty documents from R Markdown
